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[ CAS No. 399-52-0 ] {[proInfo.proName]}

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Chemical Structure| 399-52-0
Chemical Structure| 399-52-0
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Product Details of [ 399-52-0 ]

CAS No. :399-52-0 MDL No. :MFCD00005671
Formula : C8H6FN Boiling Point : No data available
Linear Structure Formula :- InChI Key :ODFFPRGJZRXNHZ-UHFFFAOYSA-N
M.W : 135.14 Pubchem ID :67861
Synonyms :
Chemical Name :5-Fluoro-1H-indole

Calculated chemistry of [ 399-52-0 ]      Expand+

Physicochemical Properties

Num. heavy atoms : 10
Num. arom. heavy atoms : 9
Fraction Csp3 : 0.0
Num. rotatable bonds : 0
Num. H-bond acceptors : 1.0
Num. H-bond donors : 1.0
Molar Refractivity : 38.26
TPSA : 15.79 ?2

Pharmacokinetics

GI absorption : High
BBB permeant : Yes
P-gp substrate : No
CYP1A2 inhibitor : Yes
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -6.07 cm/s

Lipophilicity

Log Po/w (iLOGP) : 1.58
Log Po/w (XLOGP3) : 1.48
Log Po/w (WLOGP) : 2.73
Log Po/w (MLOGP) : 2.0
Log Po/w (SILICOS-IT) : 3.0
Consensus Log Po/w : 2.16

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 2.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : -2.28
Solubility : 0.715 mg/ml ; 0.00529 mol/l
Class : Soluble
Log S (Ali) : -1.42
Solubility : 5.15 mg/ml ; 0.0381 mol/l
Class : Very soluble
Log S (SILICOS-IT) : -3.53
Solubility : 0.0399 mg/ml ; 0.000295 mol/l
Class : Soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 0.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 1.35

Safety of [ 399-52-0 ]

Signal Word:Warning Class:
Precautionary Statements:P261-P305+P351+P338 UN#:
Hazard Statements:H315-H319-H335 Packing Group:
GHS Pictogram:

Application In Synthesis of [ 399-52-0 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 399-52-0 ]
  • Downstream synthetic route of [ 399-52-0 ]

[ 399-52-0 ] Synthesis Path-Upstream   1~1

  • 1
  • [ 541-59-3 ]
  • [ 399-52-0 ]
  • [ 198474-05-4 ]
YieldReaction ConditionsOperation in experiment
89% With zinc(II) chloride In acetonitrile at 85℃; for 24.1667 h; Alternatively, a mixture of 5-fluoroindole (5.00 g, 5.00 g, 35.5 mmol, 96 mass percent, 1.00) and maleimide (1.5 equiv., 5.17 g, 53.3 mmol, 1.50) was charged in a 50 mL vessel, and then acetonitrile (3 L/kg, 15.0 mL, 1 1.7 g, 286 mmol, 100 mass percent) and zinc chloride (1.05 equiv., 5.08 g, 37.3 mmol, 100 mass percent) were added. The reaction was heated to 85°C over 10 min and then maintained at 85°C for 24 hrs. While still at 85 °C, water (6 L/kg, 30.0 mL, 30.0 g, 1670 mmol, 100 mass percent) was added slowly, while maintaining the temperature above 80°C. Yellow solids precipitated. The reaction mixture was cooled to 50°C over 1 hour followed by stirring at 50°C for 2 hours, then cooled 10°C over 1 hour. The reaction was stirred at 10°C for 1 hour. The solids were filtered off, then the filter cake was washed 2 times with 5 ml 1 :1 ACN/water to afford isolated compound (6.85 g, 6.85 g, 29.5 mmol, 83.1 percent Yield). For purification, the resulting isolated compound was charged (6.85 g, 6.85 g, 29.5 mmol, 100 mass percent) into a vessel, followed by addition of tetrahydrofuran (6 L/kg, 41.1 mL, 36.4 g, 505 mmol, 100 mass percent). This mixture was heated to 66°C to form a homogeneous solution. Heptane (4 L/kg, 27.4 mL, 18.7 g, 187 mmol, 100 mass percent, was added slowly at 66°C ; solids began to precipitate after 5 volumes. The mixture was cooled to 25°C over 3 hours, then filtered and washed with heptane, followed by drying in the high vacuum oven overnight. Isolated compound (4.93 g, 4.93 g, 21.2 mmol, 100 mass percent, 72.0percent Yield). This isolated compound is charged 2 (1.00 g, 4.3 mmol, 100 mass percent,) into a 50ml vessel and tetrahydrofuran (6 L/kg, 6 mL, 100 mass percent) and heptane (6 L/kg, 6 mL, 100 mass percent) were added. The slurry was stirred at 25°C for 48 hrs. The solids were filtered off and dried in the high vacuum oven overnight. The Isolated compound : (0.89 g, 3.83 mmol, 100 mass percent, 89.00percent Yield).
83.1% With zinc(II) chloride In acetonitrile at 85℃; for 24 h; Route B: (0356) Alternatively, a mixture of 5-Fluoroindole (5.00 g, 5.00 g, 35.5 mmol, 96 mass percent, 1.00) and Maleimide (1.5 equiv., 5.17 g, 53.3 mmol, 1.50) was charged in a 50 mL vessel, and then Acetonitrile (3 L/kg, 15.0 mL, 11.7 g, 286 mmol, 100 mass percent) and Zinc Chloride (1.05 equiv., 5.08 g, 37.3 mmol, 100 mass percent) were added. The reaction was heated to 85° C. over 10 min and then maintained at 85° C. for 24 hrs. While still at 85° C., Water (6 L/kg, 30.0 mL, 30.0 g, 1670 mmol, 100 mass percent) was added slowly, while maintaining the temperature above 80° C. Yellow solids precipitated. The reaction mixture was cooled to 50° C. over 1 hour followed by stirring at 50° C. for 2 hours, then cooled 10° C. over 1 hour. The reaction was stirred at 10° C. for 1 hour. The solids were filtered off, then the filter cake was washed 2 times with 5 ml 1:1 ACN/water to afford isolated compound (6.85 g, 6.85 g, 29.5 mmol, 83.1percent Yield). (0357) For purification, the resulting isolated compound was charged (6.85 g, 6.85 g, 29.5 mmol, 100 mass percent) into a vessel, followed by addition of Tetrahydrofuran (6 L/kg, 41.1 mL, 36.4 g, 505 mmol, 100 mass percent). This mixture was heated to 66° C. to form a homogeneous solution. Heptane (4 L/kg, 27.4 mL, 18.7 g, 187 mmol, 100 mass percent, was added slowly at 66° C.; solids began to precipitate after 5 volumes. The mixture was cooled to 25° C. over 3 hours, then filtered and washed with heptane, followed by drying in the high vacuum oven overnight. Isolated compound (4.93 g, 4.93 g, 21.2 mmol, 100 mass percent, 72.0percent Yield). (0358) This isolated compound is charged 2 (1.00 g, 4.3 mmol, 100 mass percent) into a 50 ml vessel And Tetrahydrofuran (6 L/kg, 6 mL, 100 mass percent) and Heptane (6 L/kg, 6 mL, 100 mass percent) were added. The slurry was stirred at 25° C. for 48 hrs. The solids were filtered off and dried in the high vacuum oven overnight. The Isolated compound: (0.89 g, 0.89 g, 3.83 mmol, 100 mass percent, 89.00percent Yield).
83.1%
Stage #1: With zinc(II) chloride In acetonitrile at 85℃; for 24 h; Microwave irradiation
Stage #2: at 10 - 80℃; for 4 h;
Alternatively, a mixture of 5-Fluoroindole (5.00 g, 5.00 g, 35.5 mmol, 96 mass percent, 1.00) and Maleimide (1.5 equiv., 5.17 g, 53.3 mmol, 1.50) was charged in a 50 mL vessel, and then Acetonitrile (3 LIkg, 15.0 mL, 11.7 g, 286 mmol, 100 mass percent) and Zinc Chloride (1.05 equiv., 5.08 g, 37.3 mmol, 100 mass percent) were added. The reaction washeated to 85°C over 10 mm and then maintained at 85°C for 24 hrs. While still at 85°C, Water (6 L/kg, 30.0 mL, 30.0 g, 1670 mmol, 100 mass percent) was added slowly, while maintaining the temperature above 80°C. Yellow solids precipitated. The reaction mixture was cooled to 50°C over 1 hour followed by stirring at 50°C for 2 hours, then cooled 10°C over 1 hour. The reaction was stirred at 10°C for 1 hour. The solids werefiltered off, then the filter cake was washed 2 times with 5 ml 1:1 ACN/water to afford isolated compound (6.85 g, 6.85 g, 29.5 mmol, 83.1percent Yield).For purification, the resulting isolated compound was charged (6.85 g, 6.85 g, 29.5mmol, 100 mass percent) into a vessel, followed by addition of Tetrahydrofuran (6 L/kg, 41.1mL, 36.4 g, 505 mmol, 100 mass percent). This mixture was heated to 66°C to form ahomogeneous solution. Heptane (4 L/kg, 27.4 mL, 18.7 g, 187 mmol, 100 mass percent, wasadded slowly at 66°C; solids began to precipitate after 5 volumes. The mixture wascooled to 25°C over 3 hours, then filtered and washed with heptane, followed by dryingin the high vacuum oven overnight. Isolated compound (4.93 g, 4.93 g, 21.2 mmol, 100mass percent, 72.0percent Yield). This isolated compound is Form 2 shown in FIG. 2.
Reference: [1] Patent: WO2016/181349, 2016, A1, . Location in patent: Page/Page column 26
[2] Patent: US2015/329525, 2015, A1, . Location in patent: Paragraph 0352-0358
[3] Patent: WO2016/181275, 2016, A1, . Location in patent: Page/Page column 20; 21
[4] Journal of Medicinal Chemistry, 2017, vol. 60, # 23, p. 9617 - 9629
[5] Tetrahedron, 2005, vol. 61, # 23, p. 5599 - 5614
[6] Patent: WO2016/181348, 2016, A1, . Location in patent: Page/Page column 31-32
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