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Cifone, Matthew T. ; He, YongLe ; Basu, Rajeswari , et al. J. Med. Chem.,2022,65(24):16510-16525. DOI: 10.1021/acs.jmedchem.2c01380 PubMed ID: 36459397
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Abstract: The relationship between drug-target residence time and the post-antibiotic effect (PAE) provides insights into target vulnerability. To probe the vulnerability of bacterial acetyl-CoA carboxylase (ACC), a series of heterobivalent inhibitors were synthesized based on pyridopyrimidine 1 and moiramide B (3) which bind to the biotin carboxylase and carboxyltransferase ACC active sites, resp. The heterobivalent compound 17, which has a linker of 50 ?, was a tight binding inhibitor of Escherichia coli ACC (Kiapp 0.2 nM) and could be displaced from ACC by a combination of both 1 and 3 but not just by 1. In agreement with the prolonged occupancy of ACC resulting from forced proximity binding, the heterobivalent inhibitors produced a PAE in E. coli of 1-4 h in contrast to 1 and 3 in combination or alone, indicating that ACC is a vulnerable target and highlighting the utility of kinetic, time-dependent effects in the drug mechanism of action.
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CAS No. : | 2834-05-1 | MDL No. : | MFCD00002732 |
Formula : | C11H21BrO2 | Boiling Point : | - |
Linear Structure Formula : | Br(CH2)10COOH | InChI Key : | IUDGNRWYNOEIKF-UHFFFAOYSA-N |
M.W : | 265.19 | Pubchem ID : | 17812 |
Synonyms : |
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Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
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50% | Preparation of Compound b1-8; 3,5-Bis(trifluoromethyl) phenol (20.6 g) was dissolved in 1N sodium hydroxide (270 mL). The solution was refluxed under heating for 10 hours. Further, the solution was added with 11-bromododecanoic acid (4.7 g). After the reflux under heating was continued, the reaction solution was left to be cooled. The reaction solution was added with 1N aqueous hydrochloric acid and extracted with ethyl acetate. The resulting organic layer was dried over anhydrous magnesium sulfate, and the solvent was removed. The resulting crystals was washed with hexane and purified by silica gel column chromatography to obtain 11-(3,5-Bis(trifluoromethyl) phenoxy)dodecanoic acid (18.4 g, 50percent). Preparation of Compound d1-6; 3,5-Bis(trifluoromethyl) phenol (20.6 g) was dissolved in 1N sodium hydroxide (270 mL). The solution was refluxed under heating for 10 hours. After addition of 11-bromododecanoic acid (4.7 g), the solution was kept refluxed under heating, and then left to be cooled. The reaction solution was added with 1N aqueous hydrochloric acid and extracted with ethyl acetate. The resulting organic layer was dried over anhydrous magnesium sulfate, and the solvent was removed. The resulting crystals was washed with hexane and purified by silica gel column chromatography to obtain 11-(3,5-bis(trifluoromethyl) phenoxy)dodecanoic acid (18.4 g, 50percent). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99.5% | To a suspension of potassium carbonate (0.680 g, 5 mmol)in 20 mL deaerated acetone was added 7-mercapto-4-methylcoumarin (0.481 g, 2.5 mmol), followed by stirring atroom temperature for 1 h, whereupon a cloudy orange solutionformed. To this solution was added 11-bromoundecanoic acid(0.796 g, 3.0 mmol) in 10 mL acetone, and on continued stirring atroom temperature for 2 h the color of the reaction mixture changedto light yellow. The solvent was then evaporated and the residuewas washed by acetone (3×50 mL), treated with 100 mL H2O, andacidified by addition of 1 M HCl to pH 4. The resulting solutionwas extracted with 100 mL CHCl3, the organic layer was washedwith 100 mL H2O, then the solvent was evaporated and the solidresidue was chromatographed on silica gel using CHCl3-EtOAc(9:1) as eluent. The fractions of the product were combined andfreeze-dried from benzene to give 4 as a light yellow powder(0.998 g, 99.5%). IR (CHCl3): 1738, 1732, 1721, 1603 cm-1; 1H NMR(CDCl3, 200 MHz) 1.16-1.82 (br m, 16H), 2.36 (t, J = 7.6 Hz, 2H),2.41 (s, 3H), 2.99 (t, J = 7.4 Hz, 2H), 6.22 (s, 1H), 7.16 (d, J = 8.1 Hz,2H), 7.47 (d, J = 8.9 Hz, 1H); 13C NMR (CDCl3, 200 MHz) 18.72,24.80, 28.82, 29.01, 29.24, 29.34, 29.46, 29.52, 29.61, 32.32, 34.23,113.85, 113.99, 117.09, 123.10, 124.63, 143.97, 152.43, 154.06,160.94, 179.35; Anal. Calcd for C21H28O4S: C 66.99, H 7.50; Found:C 67.29, H 7.77; MS M+ (C21H28O4S) Calcd: 376.1700; Found:376.1708; Rf (CHCl3-EtOAc 9:1) = 0.18. | |
87% | To a suspension of K2CO3 (1.0 g, 7.2 mmol) in 20 mL acetone thathas been bubbled by nitrogen for 20 min, 7-mercapto-4-methylcoumarin (0.72 g, 3.8 mmol) was added. Reaction mixture wasstirred at room temperature for 30 min and a cloudy orangesolution formed. To this solution was added 11-bromoundecanoi-cacid (1.2 g, 4.5 mmol) in 15 mL acetone, yielding a pale yellowprecipitate. The reaction was stirred for 2 h at room temperatureand solvent was evaporated with a rotary evaporator to form a paleyellow product. 100 mL deionized water was added to this paleyellow residue, followed by addition of 1 M HCl until the pH was 4.The resulting solution was extracted with 100 mL CHCl3. Theorganic layer was washed with 100 mL deionized water andextracted again. The organic layer was dried over anhydroussodium sulfate and the solvent was removed with a rotaryevaporator to give a light yellow residue. This residue waschromatographed twice on silica gel using CHCl3-EtOAc (9:1) aseluent. The fractions of the product were collected and solventswere evaporated to give a very light yellow powder 10 (1.30 g,87%); Rf (CHCl3-EtOAc 9:1) = 0.20. Our experimental data matchedthat of a previous report (Wang et al., 2013). |